Exhibit A: Reductio Ad Absurdum Exhibit B: Genetic Dark Matter “A fruit fly study suggests the whole-genome approach may be the way to go.” Exhibit C: The Genome vs The Gene Exhibit D: The Proteome vs The Genome “you need to look at the things that the genes are producing, and...

Imagine a multiverse, infinitely infinite.  There’s just infinity.  Or if you prefer, nothing.   There’s no space, no time, no matter, no energy.  There’s no structure whatsoever, and nothing “in” any of the universes that make up the multiverse.  it’s not even clear...

I was just interviewed by International Mentoring Network and as a thank you for my time they asked if there was anyone I would like to interview.  Anyone in their network, I asked ?  No, anyone in the world.  Whoever it is, they will try to make it happen.  Now that’s an interesting...

As careful readers of this blog will note, I’ve been obsessed with Alex Ryan’s visualization of the way new levels of organization come into being (e.g. atoms –> molecules –> cells, etc).  In an attempt to complement and extend his model, here’s a visualization of how I...

As readers of my blog posts know, I talk a lot about evolutionary systems, the formal structure of cooperation, the role of both in emergence of new levels of complexity, and I sometimes use cellular automata to make points about all these things and the reification of useful models (here’s a summary...

Some say a picture is worth a thousand words.  One can probably get a bulk deal on 292 pictures (via Marginal...

Highlights from a NYT article looking into emergence in happiness, obesity, drinking, smoking in a group of 15,000 people over three decades.  Friends of friends, directionality of friends, and even DNA seem to play a role in the network.  Pay attention to the details and read the entire 10 page article...

NPR’s On The Media recently had a series of interesting segments on the future of the internet: Audio clip: Adobe Flash Player (version 9 or above) is required to play this audio clip. Download the latest version here. You also need to have JavaScript enabled in your browser. A theme that ran through...

This is not my meditation, it was created by Cellucidate: ...

Heng, et al recently published a review paper that brings together and touches on many different aspects of cancer complexity.  I thought this an opportunity to selectively quote the paper and organize the quotes loosely around various complex systems concepts they relate to.  I’m curious whether...

With his permission, I am posting an email thread between myself and Alfred Hubler.  I had contacted him on the recommendation of John Miller when Kevin and I were posting on the possibility of dampening boom-bust cycles in the financial markets through policy or other mechanisms.  Here’s what Hubler...

The import of this talk goes way beyond the specific and stunning work that Bassler and her team have done on quorum sensing.  In my mind, this is the prototype for good biological...

I asked this question on twitter/facebook and got a lot of variants of “I agree” and only one person who stated disagreement (but provided inadequate reason, IMO).  Jay Greenspan put it this way: Interesting question this morning, and something I’ve been wondering about. I’ve yet to...

One of my favorite talks of TED 2009 was from Tim Berners-Lee, the man often credited with (actually) inventing the Web.  He’s been going on for quite a while about the coming of the “semantic web” and how it will be even bigger than the current web in terms of impact.  But until his TED...

Response to Superorganism as Terminology. I was actually about to post something about terminology, so I’m glad this came up. It’s just so difficult to choose words to describe concepts that have little precedent, without going to the extreme of overloading on the one end (e.g....

This is a response to Kevin’s post responding to my post. Rafe makes an analogy to cells within a multicellular organism. How does this support the assertion that there will only be one superorganism and that we will need to subjugate our needs to its own?  Obviously, there are many multicellular...

In a previous post I asked what you thought this was: Here is the same system at different resolutions (lowest to highest): ...

Here are some notes that I took at TED 2008.  I have a bunch more on each of the speakers individually which I may post as time permits.  Let me know if you want me to expand any of the notes below into a full post. ...

Not having had any serious biological training I have to go to Wikipedia and Google to learn the basics. And I’m often surprised to find that concepts everyone uses don’t have good consensus amongst scientists. When reading the Wikipedia entry for “gene”, it occurs to me that if the...

One of the most basic but misleading heuristics that the human mind uses is that of linearity. If we see a progression (say 0, 1, 2), our first instinct is that the next step follows linearly (namely 3). But there is no a priori reason to prefer the linear interpretation to any other, say quadratic (which...

I just finished reading Complex Adaptive Systems and thought I’d share some of the stuff I underlined and point out how it relates to certain themes and claims in this blog. The organization of these quotes is my own, not related to the chapter or section headings of the book necessarily....

[ The following is a repost from my MySpace blog, which is not accessible unless you have an account there. Also, the audience there isn't really interested in this stuff :-) ] The notion that the “network is the computer” – or at least that it could be – has been around for a while....

Science News reports that a 2005 study of obese and normal-weighted people found that “30% of the obese group showed signs of previous adenovirus-36 infection, while only 11 percent of the lean group did”. Recent research showed that the virus induces long-term changes in how stem cells develop,...

There is a movement afoot in the business world that parallels the growing maturity of the internet and Web 2.0. Let’s call it Management 2.0. Google is a famous example at the vanguard, notable not so much for its management innovation per se — many companies are just as innovative when it...

One useful model of how information flows between elements of a level is the mathematical abstraction of a graph, more plainly known as a network. The internet is our current exemplar, but most levels of organization are amenable to network modelling of information flow: social networks, biochemical...